Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRLNSSAPGTPGTPAADPFQRAQAGLEEALLAPGFGNASGNASERVLAAPSSELDVNTDIYSKVLVTAVYLALFVVGTVGNTVTAFTLARKKSLQSLQSTVHYHLGSLALSDLLTLLLAMPVELYNFIWVHHPWAFGDAGCRGYYFLRDACTYATALNVASLSVERYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAVPMLFTMGEQNRSADGQHAGGLVCTPTIHTATVKVVIQVNTFMSFIFPMVVISVLNTIIANKLTVMVRQAAEQGQVCTVGGEHSTFSMAIEPGRVQALRH--GVRVLRAVVIAFVVCWLPYHVRRLMFCYISDEQWTPFLYDFYHYFYMVTNALFYVSSTINPILYNLVSANFRHIFLATLACLCPVWRRRRKR-PAFSRKADSVSSNHTLSSNATRETLY |
| 2Y01 Chain:A ((16-300)) | ----------------------------------------------------------------LLMALVVLLIVAGNV------LVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFG--ATLVVRGTWLWGSFLCELWTSLDVLCVTASIETLCVIAIDRYLAITSPFRYQSLMTRARAKVIICTVWAISAL--VSFLPIMMHWWRDEDPQALKCYQDPGCCDFVTNRAYAIASSIISFYIPLLIM----IFVALRVY---REAKEQ-------------------SRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDL--VP------DWLFVAFNWLGYANSAMNPIIY----------------CRSPDFRKAFKRLLA------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Y01.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -184849 for 2014 contacts (-91.8/contact) +
2D Compatibility (PS) -27936 + (NN) -11214 + (LL) 8736
1D Compatibility (HY) -25600 + (ID) 4150
Total energy: -245013.0 ( -121.65 by residue)
QMean score : 0.332
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