Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | METSSPRPPRPSSNPGLSLDARLGVDTRLWAKVLFTALYALIWALGAAGNALSAHVVLKARAGRAGRLRHHVLSLALAGLLLLLVGVPVELYSFVWFHYPWVFGDLGCRGYYFVHELCAYATVLSVAGLSAERCLAVCQPLRARSLLTPRRTRWLVALSWAASLGLALPMAVIMGQKHELETADGEPEPASRVCTVLV--------SRTALQVFIQVNVLVSFVLPLALTAFLNGVTVSHLLALCSQVPSTSTPGSSTPSRLELLSEEGLLSFIVWKKTFIQGGQVSLVRHKDVRRIRSLQRSVQVLRAIVVMYVICWLPYHARRLMYCYVPDDAWTDPLYNFYHYFYMVTNTLFYVSSAVTPLLYNAVSSSFRKLFLEAVSSLCGEHHPMKRLPPKPQSPTLMDTASGFGDPPETRT |
4RWA Chain:A ((123-406)) | --------------------------------IAITALYSAVCAVGLLGNVLVMFGIVRYTKMKTAT-NIYIFNLALADAL---ATSTLPFQSAKYLMETWPFGELLCKAVLSIDYYNMFTSIFTLTMMSVDRYIAVCHPVKALDFRTPAKAKLINICIWVLASGVGVPIMVM---------AVTRPRDGAVVCMLQFPSPSWYWDTVTKICVF-----LFAFVVPILI------ITVCYGLMLL---------GS---------------------------------KEKD----RSLRRITRMVLVVVGAFVVCWAPIHIFVIVWTLVDIDR-RDPLVVAALHLCI---ALGYANSSLNPVLYAFLDENFKRCFRQLC------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RWA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -225597 for 2037 contacts (-110.7/contact) +
2D Compatibility (PS) -27748 + (NN) -13127 + (LL) 7072
1D Compatibility (HY) -27600 + (ID) 3750
Total energy: -290750.0 ( -142.73 by residue)
QMean score : 0.340
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