Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDKINQTFVREFILLGLSGYPKLEIIFFALILVMYVVILIG---NGVLIIASILDSRLHMPMYFFLGNLSFLDICYTTSSIPSTLVSLISKKRNISFSGCAVQMFFGFAMGSTECFLLGMMAFDRYVAICNPL-RYPIIMNKVVYVLLTSVSWLSGGINSTVQTSLAMRWPFCGNNIINHFLCEILAVLKLACSDISVNIVTLAVSNIAFL--------VLPLLVIFFSYMFILYTILRTNSATGRHKAFSTCSAHLTVVIIFYGTIFFMYAKPKSQDLLGKDNLQATE-GLVSM----FYGVVTPMLNPIIYSLRNKDVKAAIKYLLSRKAINQ |
| 4A4M Chain:A ((40-315)) | --------------------------FSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIM-----------GVAFTWVMALA-----CAAPPLVGWSRYIPEGMQCSCG-IDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIYVIAFLICWLPYAGVAFYIFTHQGSCFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4A4M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -220293 for 1948 contacts (-113.1/contact) +
2D Compatibility (PS) -25439 + (NN) 4805 + (LL) 3716
1D Compatibility (HY) -8400 + (ID) 500
Total energy: -246111.0 ( -126.34 by residue)
QMean score : 0.113
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