Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDGENHSVVSEFLFLGLTHSWEIQLLLLVFSSVLYVASITGNIFIVFSVTTDPHLHSPMYFLLASLSFIDL----GACSVTSPKMIYDLFRKRKVISFGGCIAQIFFIHVIGGVEMVLLIAMAFDRYVALCKPLHYLTIMSPRMCLSFLAVAWTLGVSHSLFQLAFLVNLAF-CGPNVLDSFYCDLPRLLRLACTDTYRLQFMVTVNSGFIC---VGTFFILLI----SYVFILFTVWKHSSGGSSKALSTLSAHSTVV--------------LLFFGPPMFVYTRPHPNSQMDK-FLAI--FDAVLTPFLNPVVYTFRNKEMKAAIKRVCKQLVIYKKIS |
| 1F88 Chain:A ((31-314)) | ----------------LAEPWQFSMLA-AYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTT----LYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMS----------------NFRFGENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTV-KEAAA----SATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFT--HQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKNPSTTV |
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General information:
TITO was launched using:
| RESULT:
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Template: 1F88.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -204538 for 1892 contacts (-108.1/contact) +
2D Compatibility (PS) -24444 + (NN) 1930 + (LL) 2856
1D Compatibility (HY) -24000 + (ID) 3450
Total energy: -251646.0 ( -133.01 by residue)
QMean score : 0.177
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