Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSSSGSSHPFLLTGFPGLEEAHHWISVFFLFMYISILFGNGTLLLLIKEDHNLHEPMYFFLAMLAATDLGLALTTMPTVLGVLWLDHREIGSAA----CFSQAYFIHSLSFLESGILLAMAYDRFIAICNPLRYTSVLTNTR---------VVKIGLGVL-MRGFVSVVPPIRPLYFFLYCHSHVLSHAFCLHQDVIKLACADTTFNRLYPAVLVVFIFVLD-YLIIFISYVLILKTVLSIASREERAKALITCVSHICCVLVFYVTVIGLS-----LIHRFGKQVPHIVHLIMSYAYFLF-----PPLMNPITYSVKTKQIQNAILHLFTTHRIGT |
2YDO Chain:A ((21-306)) | ------------------------------------ILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIAI------STGFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKAHSQGCGEGQVA---CLFEDVVPM--NYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMES----------TLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 2YDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -217446 for 1827 contacts (-119.0/contact) +
2D Compatibility (PS) -25212 + (NN) -8734 + (LL) 4552
1D Compatibility (HY) -20400 + (ID) 3250
Total energy: -270490.0 ( -148.05 by residue)
QMean score : 0.212
|
|
|