Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAGRMSTSNHTQFHPSSFLLLGIPGLEDVHIWIGVPFFFVYLVALLGNTALLFVIQTEQSLHEPMYYFLAMLDSIDLGLSTATIPKMLGIFWFNTKEISFGGCLSHMFFIHFFTAMESIVLVAMAFDRYIAICKPLRYTMILT-SKIISLIAGIAVLRSLYMVVPLVFLLLRLPFCGHRIIPHTYCEHMGIARLAC---ASIKVNIRFGLGNISLLLLDVILIILSYVRILYAVF--------CLPSWEAR-LKALNTCGSHIGVILAFFTPAF--------FSFLTHRFGHNIP---QYIHIILANLYVVVPPALNPVIYGVRTKQIRERVLRIFLKTNH |
| 2YDO Chain:A ((16-302)) | ---------------------------------------IAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIAIS--TGFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTP----MLGWNNCGQPKEGKAHSQGCGEGQVACLFEDVVPMNYMVYFNFFACVLVPLLLMLGVYLRIFLAARRQLKQMES--------TLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSH-APLWLMYLAIVLSHTNSVV----NPFIYAYRIREFRQTFRKIIRSHVL |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -267325 for 1969 contacts (-135.8/contact) +
2D Compatibility (PS) -25405 + (NN) -4128 + (LL) 3752
1D Compatibility (HY) -24800 + (ID) 3400
Total energy: -321306.0 ( -163.18 by residue)
QMean score : 0.262
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