Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDLKNGSLVTEFILLGFFGRWELQIFFFVTFSLIYGATVMGNILIMVTVTCRSTLHSPLYFLLGNLSFLDMCLSTATTPKMIIDLLTDHKTISVWGCVTQMFFMHFFGGAEMTLLIIMAFDRYVAICKPL-HYRTIMSHKLLKGFAILSWIIGFLHSISQIV-LTMNLP-----FCG------HNVINNIFCDLPLVIKLACIETYTLELFVIA--DSGLLSFTCFILLLVSYIVILVSVPKKSSHGLSKALSTLSAHIIVVTLFFGPCIFIYV----WPFSSLASN-----KTLAVFYTVITPLLNPSIYTLRNKKMQEAIRKLRFQYVSSAQNF |
4J4Q Chain:A ((55-315)) | -----------------------------------------NFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIM-GVA-FTWVMALACAAPPLVGWSRYIPEGMQCSCGIDYYTPHEETNN--------------ESFVIYMFVVHFIIPLIVIFFCYGQLV--FTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4J4Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -179644 for 1712 contacts (-104.9/contact) +
2D Compatibility (PS) -23864 + (NN) -4050 + (LL) 6240
1D Compatibility (HY) -18400 + (ID) 2950
Total energy: -222668.0 ( -130.06 by residue)
QMean score : 0.237
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