Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLLTDRNTSGTTFTLLGFSDYPELQVPLFLVFLAIYNVTVLGNIGLIVIIKINPKLHTPMYFFLSQLSFVDFCYSSIIAPKMLVNLVVKDR-TISFLGCVVQFFFFCTFVVTESFL--LAVMAYDRFVAICNPLLYTVNMSQKLCVLLVVGSYAWGVSCSLELTCSALKLCFHGFNTINHFFCEFSSLLSLSCSDTYINQWLLFFLATFNEISTLLIVLTSYAFIVVTILKMRSVSGRRKAFSTCASHLTAITIFHGTILFLYCVPNSKNSRHTVKVASVFYTVVIPMLNPLIYSLRNKDVKDTVTEILDTKVFSY |
4U15 Chain:A ((21-140)) | -------------------------------FLAL--VTIIGNILVIVAFKVNKQLKTVNNYFLLSLACADLII-GVISMNLFTTYIIMNRWALGNLAC--DLWLSIDYVASNASVMNLLVISFDRYFSITRPLTYRAKRTTKRAGVMI--GLAWVISFVLWAPAILFWQYFVGKRTVPPGECFIQFLSEPTITFGTAIAAFYMPVTIMTILYWRIYKETEKMNIFEMLRIDEGGGSGGDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSR |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4U15.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -85978 for 706 contacts (-121.8/contact) +
2D Compatibility (PS) -11878 + (NN) -3175 + (LL) 2372
1D Compatibility (HY) -14800 + (ID) 1750
Total energy: -115209.0 ( -163.19 by residue)
QMean score : 0.253
|
|
|