Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSYSIYKSTVNIPLSHGVVHSFCHNMNCNFMHIFKFVLDFNMKNVTEVTLFVLKGFTDNLELQTIFFFLFLAIYLFTLMGNLGLILVVIRDSQLHKPMYYFLSMLSSVDACYSSVITPNMLVDFTTKNKVISFLGCVAQVFLAC---SFGTTECFLLAAMAYDRYVAIYNPLLYSVSMSPRVYMPLINASYVAGILHATIHTVATFSLSF--------------CGANEIRRVFCDIPPLLAISYSDTHTNQLLLFYFVGSIELVTILIVLISYGLILLAILKMYS--------AEGRRKVFSTCGAHLTGVSIYYGTI-----------LFMYVRPSSSYASDHDMIVSIFYTIVIPLLNPVIYSLRNKDVKDSMKKMFGKNQVINKVYFHTKK |
| 3VGA Chain:A ((7-302)) | ---------------------------------------------------------------SVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAIP-----FAITISTGFCAACHGCLFIACFVLVLTQSSIFSLLAIAIDRYIAIRIPLRYN---------GLVTGTRAKGII--AICWVLSFAIGLTPMLGWNNCGQSQGCGEGQVACLFEDVVPM----------NYMVYFNFFACV-LVPLLLMLGVYLRIFLAARRQLKQMESQPLPGERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVL---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VGA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -233956 for 1813 contacts (-129.0/contact) +
2D Compatibility (PS) -25278 + (NN) -3046 + (LL) 7472
1D Compatibility (HY) -26400 + (ID) 3400
Total energy: -284608.0 ( -156.98 by residue)
QMean score : 0.227
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