Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDTGNWSQVAEFIILGFPHLQGVQIYLFLLLLLIYLMTVLGNLLIFLVVCLDSRLHTPMYHFVSILSFSELGYTAATIPKMLANLLSEKKTISFSGCLLQIYFFHSLGATECYLLTAMAYDRYLAICRPLHYPTLMTPTLCAEIAIGCWLGGLA------------GPVVEISLISRLPFCGPNRIQHVFCDFPPVLSLACTDTSINVLVDFVINSCKILATFLLILCSYVQIICTVLR-------IPSAAGK--RKAISTCASHFTVVLIFYGSILSMY-VQLKKSYSLDYDQA------LAVVYSVLTPFLNPFIYSLRNKEIKEAVRRQLKRIGILA |
| 2YDO Chain:A ((14-304)) | -------------------------------LAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSAAAADILVGVLAIPFAIA--ISTGFCAACHGCLFIACFVLVLTASSIFSLLAIAIDRYIAIRIPLRYNGLVTGTRAKGIIAICWVLSFAIGLTPMLGWNNCGQPKEGKAHSQ--GCGEGQVACLFEDVVP----------MNYMVYFNFFAC-VLVPLLLMLGVYLRIFLAARRQLKQMES-------TLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRSHVLRQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 2YDO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -246199 for 1964 contacts (-125.4/contact) +
2D Compatibility (PS) -25899 + (NN) -13374 + (LL) 3896
1D Compatibility (HY) -24400 + (ID) 3900
Total energy: -309876.0 ( -157.78 by residue)
QMean score : 0.331
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