Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MITFLPIIFSILVVVTFVIGNFANGFIALVNSTEWVKRQKISFADQIVTALAVSRVGLLWVLLLNWYSTVLNP--AFCSVELRTTAYNIWAVTGHFSNWPATSLSIFYLLKIANFSNLIFLRLK--RRVKSVILVVLLGPLLFLACHLFVVNMNQIVWTKEYEGNMTWKIKLRRAMYLSDTTVTMLANLVPFTVTLISFLLLVCSLCKHLKKMQLHGKGSQDPSTKVHIKVLQTVISFFLLRAIYFVSVIISVWSFKNLENKPVFMFCQAIGFSCSSAHPFILIWGNKKLKQTYLSVLWQMRY |
3PBL Chain:A ((41-230)) | --------YALSYCALILAIVFGNGLVCMAVLKE---RALQTTTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVV---MPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLFGFNTT--G--DPTVCSISN----PDFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLD |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PBL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -120426 for 1251 contacts (-96.3/contact) +
2D Compatibility (PS) -18241 + (NN) -513 + (LL) 2340
1D Compatibility (HY) -7600 + (ID) 1050
Total energy: -145490.0 ( -116.30 by residue)
QMean score : 0.230
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