Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVTCGD----VTSAVAPCMSYARGQ-------ASAPSGACCSGVRTLNAKASTPADRKAACNCLKNLAGSG----------------ISMGNAANIPGKCGVSV--SFPINTKTNCNNLH-----
1HSS Chain:A ((5-124))
--MCYPGQAFQVPALPACRPLLRLQCNGSQVP-EAVLRDCCQQLAHI--------SEWCRCGALYSMLDS-MYKEHGAFPRCRREVVKLTAASITA--VCRLPIVVDASGDGAYVCKDVAAYPDA
General information:
TITO was launched using:
RESULT:
Template:
1HSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36033 for 532 contacts (-67.7/contact) +
2D Compatibility (PS) -7757 + (NN) -1420 + (LL) 296
1D Compatibility (HY) -3200 + (ID) 650
Total energy: -48764.0 ( -91.66 by residue)
QMean score : 0.258
(partial model without unconserved sides chains):
PDB file :
Tito_1HSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HSS-query.scw
PDB file :
Tito_Scwrl_1HSS.pdb
: