Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------AVANCGQVVSYLAPCISYAMGRVSVPGGGCCSGVRGLN--------AAAATPADRKTTCTCLKQQASGMGGI-------KPNLVAGIPGKCGVNIPYAISPRTDCSKVR
3U2A Chain:A ((10-121))
IWDATATLEALGAADVALWIWEP----ETDRLRLNGAARALGLGPLAPECSSAAFRALALPQDRAQAEEVLKPREPGSEVVARFRVRGGETLWRGVWLEEGVRAAGVVAPETKFS---
General information:
TITO was launched using:
RESULT:
Template:
3U2A.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26440 for 556 contacts (-47.6/contact) +
2D Compatibility (PS) -9614 + (NN) -6120 + (LL) 680
1D Compatibility (HY) -2800 + (ID) 1050
Total energy: -45344.0 ( -81.55 by residue)
QMean score : 0.341
(partial model without unconserved sides chains):
PDB file :
Tito_3U2A.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U2A-query.scw
PDB file :
Tito_Scwrl_3U2A.pdb
: