Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ASCNAG--QLTVCASAMLSGAA-PSAACCSNLKA-----------QQGCLCQFAKNPAYARY--VNSPNARKTVASCGVALPRC
1AFH Chain:A ((3-80))
-SCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKNAA-AGVSGLNAGNAASIPSKCGVSIP--
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26220 for 423 contacts (-62.0/contact) +
2D Compatibility (PS) -6300 + (NN) 1294 + (LL) 644
1D Compatibility (HY) -3200 + (ID) 1150
Total energy: -34932.0 ( -82.58 by residue)
QMean score : 0.469
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: