Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DEMMGRCMHEIANCLVAIDKGTK-LPSYCCGRMVK-----------PQPCACKYF------IKNPVLLPRLLIACRVPHPKC
1AFH Chain:A ((8-80))
-------ASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIP--
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39251 for 352 contacts (-111.5/contact) +
2D Compatibility (PS) -5398 + (NN) 267 + (LL) 548
1D Compatibility (HY) 1200 + (ID) 550
Total energy: -43184.0 ( -122.68 by residue)
QMean score : 0.260
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: