Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTCSP--MQLSPCATAITSSSP-PSALCCAKLKE-----------QRPCLCGYMRNPSLRRF--VSTPNARKVSKSCKLPIPRC
1AFH Chain:A ((3-80))
-SCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKNAA-AGVSGLNAGNAASIPSKCGVSIP--
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16730 for 414 contacts (-40.4/contact) +
2D Compatibility (PS) -6419 + (NN) -2556 + (LL) 444
1D Compatibility (HY) -4400 + (ID) 800
Total energy: -30461.0 ( -73.58 by residue)
QMean score : 0.364
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: