Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APRGAHGAG-----ECGKTP---------ADKMALKLAPCASAGQDPKSAPSSGCCTAVHTI---GKQSPKCLCAVMLSDTAKSAGIKPEVAMSIPKRC---NLVDRPVGYKCGAYTLP----
1QM4 Chain:A ((129-251))
EDVGAGDQGLMFGYATDETEECMPLTIVLAHKLNTRMADLRRSGVLPWLRPDSKTQVTVQYVQDNGAVIPVRVHTIVISVQHNEDITLEAMREALKEQVIKAVVPAKYLDEDTIYHLQPSGRF
General information:
TITO was launched using:
RESULT:
Template:
1QM4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19988 for 579 contacts (-34.5/contact) +
2D Compatibility (PS) -10637 + (NN) -5192 + (LL) 0
1D Compatibility (HY) -400 + (ID) 800
Total energy: -37017.0 ( -63.93 by residue)
QMean score : 0.337
(partial model without unconserved sides chains):
PDB file :
Tito_1QM4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QM4-query.scw
PDB file :
Tito_Scwrl_1QM4.pdb
: