Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LSCGQVNSALAPCITFL--TKGGVPSGPCCSGVRGLLGAA------KTTADRQAACNCLK---------AAAGSLHGLNQGNAAA-LPGRCGVSI-PYKISTSTNCATIKF-----
2D5R Chain:B ((24-139))
HMQLEIQVALNFIISYLYNKLPRRRVNIFGEELERLLKKKYEGHWYPEKPYKGSGFRCIHIGEKVDPVIEQASKESGLDIDDVRGNLPQDLSVWIDPFEVSYQIGEKGPVKVLYVD
General information:
TITO was launched using:
RESULT:
Template:
2D5R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36273 for 584 contacts (-62.1/contact) +
2D Compatibility (PS) -9313 + (NN) 1988 + (LL) 0
1D Compatibility (HY) -4800 + (ID) 800
Total energy: -49198.0 ( -84.24 by residue)
QMean score : 0.250
(partial model without unconserved sides chains):
PDB file :
Tito_2D5R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2D5R-query.scw
PDB file :
Tito_Scwrl_2D5R.pdb
: