Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVTCGQVTSSLAPCIGYLTGNGAGGVPPGCCGGIKSLNSAAQ--------TTPDRQ-AACKCIKSAAAGISGINYGIASGPPGKCGVNIPYKISPSTDCNSVK-----
4HLB Chain:A ((21-115))
--DSDRFTAFEEELLARYADKG-----------IRSVDVAAYAKGIDIVFVAADRKMTRAEFSAIASRSIRELKERFGFDKDVPIGAVLDYKKDAATDTRTRFVLKLR
General information:
TITO was launched using:
RESULT:
Template:
4HLB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8421 for 445 contacts (-18.9/contact) +
2D Compatibility (PS) -8235 + (NN) -1992 + (LL) -356
1D Compatibility (HY) -1200 + (ID) 750
Total energy: -20954.0 ( -47.09 by residue)
QMean score : 0.003
(partial model without unconserved sides chains):
PDB file :
Tito_4HLB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HLB-query.scw
PDB file :
Tito_Scwrl_4HLB.pdb
: