Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------AVSCGTV--TGDLAPCIPYL----------------------TGGAGPTDSCCAGVKKLLAAAPTTADRQAACNCLKTAAGNINNLNP----------GNAAALPGKCNVNIPYKISTTTNCNTIKF
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCG--VRCMRQTRTN------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20612 for 566 contacts (-36.4/contact) +
2D Compatibility (PS) -7938 + (NN) -3847 + (LL) 1256
1D Compatibility (HY) -3200 + (ID) 900
Total energy: -35241.0 ( -62.26 by residue)
QMean score : 0.296
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: