Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APPSCPTVTTQLAPCLS-----YIQGGGDPSVPCCTGINN---IYELAKTKEDRVAI----CNCLKTAFTHAGNVNPTLVAQLPKKCGISFNMPPIDKNYDCNTISMY-------
1IPI Chain:A ((1-114))
MYRKGAQAERELIKLLEKHGFAVVRSAGSKKVDLVAGNGKKYLCIEVKVTKKDHLYVGKRDMGRLIEFSRRFGG-IPVLAVKFLNVGWRFIEVSPKIEKFVFTPSSGVSLEVLLG
General information:
TITO was launched using:
RESULT:
Template:
1IPI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45331 for 621 contacts (-73.0/contact) +
2D Compatibility (PS) -10101 + (NN) -5855 + (LL) 192
1D Compatibility (HY) -4400 + (ID) 750
Total energy: -66245.0 ( -106.67 by residue)
QMean score : 0.364
(partial model without unconserved sides chains):
PDB file :
Tito_1IPI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1IPI-query.scw
PDB file :
Tito_Scwrl_1IPI.pdb
: