Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AIECSDVLSRPVHCLSYFVTPRATLTPTSACCRESEEVLGMANSMGAKEDLCNCFVGLIRGFRPNPNKIEGLLSSCALQ-----LFF----------PIDPVTALPDCTQIQ---
1PRT Chain:D ((1-110))
-DVPYVLVKTNMVVTSVAMKPYEVTPTRMLVCGIAAK-LGAAAS-SPDAHVPFCFGKDLK--RPGSSPMEVMLRAVFMQQRPLRMFLGPKQLTFEGKPALELIRMVECSGKQDCP
General information:
TITO was launched using:
RESULT:
Template:
1PRT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29010 for 550 contacts (-52.7/contact) +
2D Compatibility (PS) -9544 + (NN) 1828 + (LL) 504
1D Compatibility (HY) -5200 + (ID) 900
Total energy: -42322.0 ( -76.95 by residue)
QMean score : 0.151
(partial model without unconserved sides chains):
PDB file :
Tito_1PRT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PRT-query.scw
PDB file :
Tito_Scwrl_1PRT.pdb
: