Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------AITCGTVVTR---LTPCLTYLR-------------SGGAVAPACCNGVKALNNDAKTTPDRQAACGCLKTASTSISGIQLGNAASLAGKCGVNLPYK--ISPTIDCSKVK
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLD----------EKCMC-PAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLMSQ-PCQM--
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47151 for 520 contacts (-90.7/contact) +
2D Compatibility (PS) -7490 + (NN) 2681 + (LL) 796
1D Compatibility (HY) -4800 + (ID) 750
Total energy: -56714.0 ( -109.07 by residue)
QMean score : 0.213
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: