Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------------ITCGQVVSN--LTPCITYLQRGG----------------------AVPGQCCNGVKTLVSSAQTTADKQTACNCLKSTAATIPNIN----------FGNAGSLPGKCGVNLPYKISPSTNCASIKF
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSC--GVRCMRQTRTN------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -22042 for 567 contacts (-38.9/contact) +
2D Compatibility (PS) -7360 + (NN) 203 + (LL) 1240
1D Compatibility (HY) -2800 + (ID) 1050
Total energy: -31809.0 ( -56.10 by residue)
QMean score : 0.333
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: