Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------ISCTEAVAAMNPCLPFLIG--------AQASPVAPCCLAVQNVNQEASTKEIRRELCDCFKKAGPALGVKP----------DKAKQLP---------DLCHVQVPVPIDPTIDCSKVTEDIAW-
2WNY Chain:A ((4-140))
MRDMIHNISYCLMVYGTEDEEKVIEALRNVIPGATPERESAEGYHGNPITVLRGRLDRRRALREFMEKFTEVFRGRMDELEDRFDENGNLFLRLDKQKALEGVWEPVRHGDAIHLKIKVEAYPAKREVAVENIRKIL
General information:
TITO was launched using:
RESULT:
Template:
2WNY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13306 for 515 contacts (-25.8/contact) +
2D Compatibility (PS) -10109 + (NN) -3634 + (LL) 0
1D Compatibility (HY) -2400 + (ID) 900
Total energy: -30349.0 ( -58.93 by residue)
QMean score : 0.310
(partial model without unconserved sides chains):
PDB file :
Tito_2WNY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WNY-query.scw
PDB file :
Tito_Scwrl_2WNY.pdb
: