Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------ITCGQVASS--LGPCLNYLKGAG----------------GTAPSAACCNGVRGINSAAKTTADRQTACQCLKSA---ANGIPGLQPKLAESLPGNCNVNIPYKISLSTNCQSIK
1W2Q Chain:A ((1-127))
GPMRRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDVSGGRCS
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23701 for 611 contacts (-38.8/contact) +
2D Compatibility (PS) -9320 + (NN) 1285 + (LL) 0
1D Compatibility (HY) -2000 + (ID) 650
Total energy: -34386.0 ( -56.28 by residue)
QMean score : 0.138
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: