Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------ALTCGQVTSS--LFSCLPYLR-------------------NTGPLGDCCSGVKKLKGQAQTTADRQTACNCLKST---AGSIKGLNFGKAASLPSTCSVNIPYE---ISPSTDCSKVQ
1W2Q Chain:A ((1-127))
GPMRRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDVSGGRCS---
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21735 for 548 contacts (-39.7/contact) +
2D Compatibility (PS) -8473 + (NN) 2321 + (LL) 376
1D Compatibility (HY) -400 + (ID) 600
Total energy: -28511.0 ( -52.03 by residue)
QMean score : 0.244
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: