Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------LSCGQVTS--GLAPCLPYLQ-------------------GSGPLGGCCGGVKGLLGAAKTPEDRKTACTCLKSA---ANSIKGIDTGKAAGLPGVCGVNIPYK---ISPSTDCSKVQ
1W2Q Chain:A ((1-127))
GPMRRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDVSGGRCS---
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -27985 for 543 contacts (-51.5/contact) +
2D Compatibility (PS) -8257 + (NN) 4813 + (LL) 376
1D Compatibility (HY) -400 + (ID) 700
Total energy: -32153.0 ( -59.21 by residue)
QMean score : 0.101
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: