Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------TVTCGQVASA---LSPCISYLQK-------------GGAVPAGCCSGIKSLNSAAKTTGDRQAACKCLKTF-----SSSVSGINYGLASGLPGKCGVSVPYKISPSTDCSKVT
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCM--------CPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM-------SQPCQM--
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43801 for 498 contacts (-88.0/contact) +
2D Compatibility (PS) -7074 + (NN) 3887 + (LL) 852
1D Compatibility (HY) -5200 + (ID) 900
Total energy: -52236.0 ( -104.89 by residue)
QMean score : 0.367
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: