Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------AAACDPKPLVVCDPAFMDGAK--------PAAACCSTLRAQEACLCVYAKDPKFAKY------------INNPNTAKTF---TSCGIAIPKC
2R2O Chain:A ((22-128))
YRPLTLNALLAAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDGATVALVPC
General information:
TITO was launched using:
RESULT:
Template:
2R2O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34119 for 356 contacts (-95.8/contact) +
2D Compatibility (PS) -7244 + (NN) 671 + (LL) 0
1D Compatibility (HY) -1200 + (ID) 500
Total energy: -42392.0 ( -119.08 by residue)
QMean score : 0.240
(partial model without unconserved sides chains):
PDB file :
Tito_2R2O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2R2O-query.scw
PDB file :
Tito_Scwrl_2R2O.pdb
: