Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------------APPSCQTV--TTQLAPCLSYIQNRVKGGGNPSVP------------------CCTGINNIYELAKTKEDRVAICNCLKNAFIHAGNVNP----------TLVAELPKKCGISFNMPPIDKNYDCNT
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCMRQTRTN------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37524 for 595 contacts (-63.1/contact) +
2D Compatibility (PS) -8323 + (NN) -7799 + (LL) 764
1D Compatibility (HY) -400 + (ID) 550
Total energy: -53832.0 ( -90.47 by residue)
QMean score : 0.266
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: