Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------------------------GVVGVAGASCNAGQLTVCAGAIAGGARPTAACCSSLR-----AQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALPTCH-
1TDP Chain:A ((1-111))
MDIKSQTLYLNLSEAYKDPEVKANEFLSKLVVQCAGKLTASNSENSYIEVISLLSRGISSYYLSHKRIIPSSMLTIYTQIQKDIKNGNIDTEKLRKYEIAKGLMSVPYIYF
General information:
TITO was launched using:
RESULT:
Template:
1TDP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19201 for 496 contacts (-38.7/contact) +
2D Compatibility (PS) -7425 + (NN) 1423 + (LL) 0
1D Compatibility (HY) -2800 + (ID) 600
Total energy: -28603.0 ( -57.67 by residue)
QMean score : 0.075
(partial model without unconserved sides chains):
PDB file :
Tito_1TDP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1TDP-query.scw
PDB file :
Tito_Scwrl_1TDP.pdb
: