Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----------------DFSALAPCDVTQLTPCA-----SAFAGKASPTAACCAKLLSHGPGCLCRYKDDASLKRLVDARHKRRVFTACKVPVPSC---------
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMM-LNEPMWIRMRDQVMSMAHNLPIECNLMSQPCQM
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21616 for 466 contacts (-46.4/contact) +
2D Compatibility (PS) -7159 + (NN) 3392 + (LL) -28
1D Compatibility (HY) -3200 + (ID) 600
Total energy: -29211.0 ( -62.68 by residue)
QMean score : 0.173
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: