Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ATCNPV--GLSPCAGAMSGSGP-PSKLCCSKLRE-----------QKPCLCGYYRDPNLRQY--VDSPNAKKVATACDVHVTC
1AFH Chain:A ((3-79))
-SCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKNAA-AGVSGLNAGNAASIPSKCGVSI--
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18340 for 420 contacts (-43.7/contact) +
2D Compatibility (PS) -6235 + (NN) -421 + (LL) 348
1D Compatibility (HY) -5200 + (ID) 900
Total energy: -30748.0 ( -73.21 by residue)
QMean score : 0.270
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: