Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----------AAEVSCGDAVSA--LIPCGSFLVGAVAG----------------APSESCCRGAQGLRRMAGTPGARRALCRCLEQSG----PSFGVLPDRARQLPALCKLGISIPVSPHTDCDKIQ
1W2Q Chain:A ((1-127))
GPMRRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNEMENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDVSGGRCS
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39098 for 610 contacts (-64.1/contact) +
2D Compatibility (PS) -9586 + (NN) 827 + (LL) 0
1D Compatibility (HY) -2400 + (ID) 650
Total energy: -50907.0 ( -83.45 by residue)
QMean score : 0.228
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: