Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------------MTLCDID-DKGLADCKPSVTQPNPVDPSPDCCEALKGADLACLCSYKNSMWLPSFGID-----PMLALSLPPKCNLQMPPNC--
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM-SQPCQM
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11403 for 440 contacts (-25.9/contact) +
2D Compatibility (PS) -7459 + (NN) -1582 + (LL) 208
1D Compatibility (HY) -4000 + (ID) 1000
Total energy: -25236.0 ( -57.35 by residue)
QMean score : 0.156
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: