Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
------------VDAMTCQQAITT--LMPCQPFLTGAAP---------------------APTVPCCLAVSNVNTAATTTQARRDLCECFEKAAPGFGVKP-----------EKAKQLPQLCGVTVPVPIDPTINCKDIQ
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVR--------DECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVR-CMRQTRTN------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29706 for 608 contacts (-48.9/contact) +
2D Compatibility (PS) -7944 + (NN) -3242 + (LL) 1240
1D Compatibility (HY) -1600 + (ID) 850
Total energy: -42102.0 ( -69.25 by residue)
QMean score : 0.284
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: