Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------------ALTCDDVTGQLFPCLTYLTLRGKNVRPPPQGCC--NGVRRLNKQAQSKADRQKACNCIKGL------AGTF---TGLNLDLVEGLP-------RRCNVNIPYKISPSTDCKKVN---------
1VEA Chain:A ((6-148))
ERRIGRLSVLLLLNEAEESTQVEELERDGWKVCLGKVGSMDAHKVIAAIETASKKSGVIQSEGYRESHALYHATMEALHGVTRGEMLLGSLLRTVGLRFAVLRGNPYESEAEGDWIAVSLYGTIGAPIKGLEHETFGVGINHI
General information:
TITO was launched using:
RESULT:
Template:
1VEA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16505 for 630 contacts (-26.2/contact) +
2D Compatibility (PS) -9664 + (NN) 4319 + (LL) 0
1D Compatibility (HY) -2400 + (ID) 700
Total energy: -24950.0 ( -39.60 by residue)
QMean score : 0.334
(partial model without unconserved sides chains):
PDB file :
Tito_1VEA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VEA-query.scw
PDB file :
Tito_Scwrl_1VEA.pdb
: