Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
SACSST----FFSALVQLI------PCRAAV-------------APFSPIPPNEACCNAIKALGQ--PCLCVLVNGPPISGVD---RNMALQLPEKCTANFEPCDVMK
1LJP Chain:A ((1-98))
TACTATQQTAAYKTLVSILSESSFSQCSKDSGYSMLTATALPTNAQYKLMCASTACNTMIKKIVALNPPDCDLT--VPTSGLVLDVYTYANGFSSKCASL--------
General information:
TITO was launched using:
RESULT:
Template:
1LJP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35961 for 384 contacts (-93.6/contact) +
2D Compatibility (PS) -7306 + (NN) -4042 + (LL) 288
1D Compatibility (HY) -3600 + (ID) 1000
Total energy: -51621.0 ( -134.43 by residue)
QMean score : 0.392
(partial model without unconserved sides chains):
PDB file :
Tito_1LJP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LJP-query.scw
PDB file :
Tito_Scwrl_1LJP.pdb
: