Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
ASTPSSNCESAQMKLVPCLTYVTGSDS-KPPTECCSGLKDLNTNNPTCLCQLITQLNSTSSGSSNVNVAKVLALPRDCSVTLITSDCPGKDLL
2RKN Chain:A ((3-77))
-----DLCGMSQDELNECKPAVSKENPTSPSQPCCTALQHA---DFACLCGYKNS---PWLGSFGVDPELASALPKQCGLANAP-TC------
General information:
TITO was launched using:
RESULT:
Template:
2RKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24520 for 511 contacts (-48.0/contact) +
2D Compatibility (PS) -7716 + (NN) -4554 + (LL) -40
1D Compatibility (HY) -2000 + (ID) 1000
Total energy: -39830.0 ( -77.95 by residue)
QMean score : 0.245
(partial model without unconserved sides chains):
PDB file :
Tito_2RKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RKN-query.scw
PDB file :
Tito_Scwrl_2RKN.pdb
: