Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------------------------VCDMDNDDFMACQPAAAATTSPTPPDPSAACCATLGKADLKCLCSYKKSPWLSLYNIDP-----------KRAMELPAKCGLSPPADC----------
1W2Q Chain:A ((1-127))
GPMRRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQE---QYDSYDIRSTRSSDQQQRCCDELNEMENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRAPQRCDLDVSGGRCS
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1847 for 379 contacts (-4.9/contact) +
2D Compatibility (PS) -7660 + (NN) -5110 + (LL) 408
1D Compatibility (HY) -2400 + (ID) 700
Total energy: -17309.0 ( -45.67 by residue)
QMean score : 0.329
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: