Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
SHNVGALASSCEESDFLYKSLPCVKGGTVMSTPSSQCCVAVRAMALECLCRLIVSA---TGASSEQTVKNYVKTCKMKAPPGFKC
1N89 Chain:A ((2-65))
----------CQASQ-LAVCASAILSG---AKPSGECCGNLRAQQ-GCFCQYAKDPTYGQYIRSPHA-RDTLTSCGLAVP-----
General information:
TITO was launched using:
RESULT:
Template:
1N89.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10734 for 386 contacts (-27.8/contact) +
2D Compatibility (PS) -6225 + (NN) -1041 + (LL) 1256
1D Compatibility (HY) -2000 + (ID) 750
Total energy: -19494.0 ( -50.50 by residue)
QMean score : 0.283
(partial model without unconserved sides chains):
PDB file :
Tito_1N89.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N89-query.scw
PDB file :
Tito_Scwrl_1N89.pdb
: