Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTCSPQ--ELSSCSAAFTSSAP-PSSTCCSKLKE-----------QKPCLCGYLKDPNFSQY--VNSAKANRIASTCGVQFPNC
1AFH Chain:A ((2-80))
ISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKNAA-AGVSGLNAGNAASIPSKCGVSIP--
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17729 for 432 contacts (-41.0/contact) +
2D Compatibility (PS) -6363 + (NN) 280 + (LL) 28
1D Compatibility (HY) -5600 + (ID) 950
Total energy: -30334.0 ( -70.22 by residue)
QMean score : 0.278
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: