Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTCSP--MELSTCANAIISSSP-PTATCCSKLKE-----------QRSCLCQYVKNPNLQKF--INSPNARKVASTCGSPFPNC
1AFH Chain:A ((3-80))
-SCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKNAA-AGVSGLNAGNAASIPSKCGVSIP--
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18812 for 414 contacts (-45.4/contact) +
2D Compatibility (PS) -6374 + (NN) -1917 + (LL) 556
1D Compatibility (HY) -4000 + (ID) 900
Total energy: -31447.0 ( -75.96 by residue)
QMean score : 0.472
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: