Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTCSPQ--ELSSCFAAFTSSAP-PSSTCCSKLKE-----------QKPCLCGYLKDPNFSQY--VNSSKAKRIASTCGVQFPNC
1AFH Chain:A ((2-80))
ISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKNAA-AGVSGLNAGNAASIPSKCGVSIP--
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -19504 for 432 contacts (-45.1/contact) +
2D Compatibility (PS) -6289 + (NN) 898 + (LL) 28
1D Compatibility (HY) -6000 + (ID) 950
Total energy: -31817.0 ( -73.65 by residue)
QMean score : 0.291
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: