Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTCGQVVGF----LTPCITYLQG--------GPGPSAACCGGVKKLNGAANTGPARKTACNCLKRAAGNI------------ARLNNNQAAALP-GKCGVNIPYKFS--TSTNCNSIRF----
1HSS Chain:A ((5-124))
-MCYPGQAFQVPALPACRPLLRLQCNGSQVP-EAVLRDCCQQLAHIS--------EWCRCGALYSMLDS-MYKEHGAFPRCRREVVKLTAASITA-VCRLPIVVDASGDGAYVCKDVAAYPDA
General information:
TITO was launched using:
RESULT:
Template:
1HSS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44083 for 543 contacts (-81.2/contact) +
2D Compatibility (PS) -7991 + (NN) 387 + (LL) -28
1D Compatibility (HY) -5600 + (ID) 750
Total energy: -58065.0 ( -106.93 by residue)
QMean score : 0.323
(partial model without unconserved sides chains):
PDB file :
Tito_1HSS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HSS-query.scw
PDB file :
Tito_Scwrl_1HSS.pdb
: