Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEFLNTHPKKKEIVAEFNNEHYINESDLKTLEEGKDLVDKINNINLIQQNEESEELNIGKVLA
2PNC Chain:A ((41-66))
-----------QLFADLSREELTTVMSFLTQQLGPDLVD------------------------
General information:
TITO was launched using:
RESULT:
Template:
2PNC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3399 for 96 contacts (35.4/contact) +
2D Compatibility (PS) -2638 + (NN) 381 + (LL) 2348
1D Compatibility (HY) -1600 + (ID) 300
Total energy: 1590.0 ( 16.56 by residue)
QMean score : 0.172
(partial model without unconserved sides chains):
PDB file :
Tito_2PNC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2PNC-query.scw
PDB file :
Tito_Scwrl_2PNC.pdb
: