Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSILLELQFYLSLPHIFSYQQMHKNEEISEAKTSRNAEEVKEIVKTQLEGLKQLKKQLKQKLGV
1PWW Chain:A ((29-62))
----------------------------NKTQEEHLKEIMKHIVKIEVKGEEAVKKEAAEKLLE
General information:
TITO was launched using:
RESULT:
Template:
1PWW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 11181 for 149 contacts (75.0/contact) +
2D Compatibility (PS) -3664 + (NN) -615 + (LL) 2876
1D Compatibility (HY) -1600 + (ID) 500
Total energy: 7678.0 ( 51.53 by residue)
QMean score : 0.414
(partial model without unconserved sides chains):
PDB file :
Tito_1PWW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PWW-query.scw
PDB file :
Tito_Scwrl_1PWW.pdb
: