Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNRIVIGISGASGSIYGMHILKALKGADCETHLVISRAGKTTIAHE----ITERLEDITSLADFY----------YSEEKIGEKIASGSFKTSGMIVAPCSMKTMSEIASGVTSNLLTRAADVTLKERRKLVLIVRESPLHLGHLQNMLKLTEMGAIIAPPMPAFYTKPKSLEDIISHSISKVLSLFDIKLPDFKEWQGV
4ZAG Chain:A ((6-200))
---RITLAMTGASGAQYGLRLLDCLVQEEREVHFLISKAAQLVMATQTDVALPAKPQAMQAFLTEYCGAAAGQIRVFGQNDWMAPPASGSSAPNAMVICPCSTGTLSAVATGACNNLIERAADVALKERRPLVLVPREAPFSSIHLENMLKLSNLGAVILPAAPGFYHQPQSVEDLVDFVVARILNTLGIPQDMLPRWGEQ
General information:
TITO was launched using:
RESULT:
Template:
4ZAG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139845 for 1452 contacts (-96.3/contact) +
2D Compatibility (PS) -19412 + (NN) -6911 + (LL) 48
1D Compatibility (HY) -15200 + (ID) 3400
Total energy: -184720.0 ( -127.22 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_4ZAG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4ZAG-query.scw
PDB file :
Tito_Scwrl_4ZAG.pdb
: