Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVQFLKENRAKRSLEIDSTVITLAIITLSLALVVYSVIKGVQKVAAKKTDNILSEVESQKVVSPRQKV
3JV2 Chain:A ((342-377))
---------AKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRP
General information:
TITO was launched using:
RESULT:
Template:
3JV2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9540 for 106 contacts (-90.0/contact) +
2D Compatibility (PS) -3913 + (NN) 809 + (LL) 1016
1D Compatibility (HY) -2000 + (ID) 650
Total energy: -14278.0 ( -134.70 by residue)
QMean score : 0.187
(partial model without unconserved sides chains):
PDB file :
Tito_3JV2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3JV2-query.scw
PDB file :
Tito_Scwrl_3JV2.pdb
: